-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3232

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 279, 317
Couldn't classify 818, 833
Sorry, prediction GeneMark_model.110887_t fails validation.
(AGC)	 AG	279-317	GC	AGG
(AGA)	 AG	339-379	GT	AGG
(GAA)	 AG	457-484	GT	AGG
(AGG)	 AG	507-512	GT	AGG
(AGG)	 AG	535-540	GT	AGG
(ACA)	 AG	573-596	GT	AGG
(AGA)	 AG	619-624	GT	AGG
(ACG)	 AG	657-662	GT	AGG
(ACG)	 AG	685-694	GT	AGG
(GAG)	 AG	818-833	GT	AGG
-recovered GeneMark_model.110887_t, internal, 279, 317
-recovered GeneMark_model.110887_t, internal, 339, 379
-recovered GeneMark_model.110887_t, internal, 457, 484
-recovered GeneMark_model.110887_t, internal, 507, 512
-recovered GeneMark_model.110887_t, internal, 535, 540
-recovered GeneMark_model.110887_t, internal, 573, 596
-recovered GeneMark_model.110887_t, internal, 619, 624
-recovered GeneMark_model.110887_t, internal, 657, 662
-recovered GeneMark_model.110887_t, internal, 685, 694
-recovered GeneMark_model.110887_t, internal, 818, 833
Couldn't classify 163, 367
Couldn't classify 818, 917
Sorry, prediction snap_scaffold_3232-snap.1-T1 fails validation.
(CCT)	 AG	163-367	GT	ATG
(GAG)	 AG	818-917	GT	CAG
-recovered snap_scaffold_3232-snap.1-T1, internal, 163, 367
-recovered snap_scaffold_3232-snap.1-T1, internal, 818, 917

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1046
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support