-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_323

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8084, 8138
Sorry, prediction GeneMark_model.107310_t fails validation.
(ATG)	 TA	7312-7694	GT	ACG
(TCA)	 AG	7745-7754	GT	TTG
(TAC)	 AG	8084-8138	GT	CAG
-recovered GeneMark_model.107310_t, initial, 7312, 7694
-recovered GeneMark_model.107310_t, internal, 7745, 7754
-recovered GeneMark_model.107310_t, internal, 8084, 8138
Valid prediction for snap_scaffold_323-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61698-T1
Valid prediction for GlimmerHMM_glimmerT_61699-T1
Valid prediction for GeneMark_model.107309_t
Valid prediction for Augustus_model.g41014.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6525, 7001
Sorry, prediction snap_scaffold_323-snap.1-T1 fails validation.
(ATG)	 CC	380-563	GT	TGG
(GGG)	 AG	607-742	GT	CGG
(GAC)	 AG	3054-3293	GT	AGG
(GCT)	 AG	6525-7001	GT	GGG
-recovered snap_scaffold_323-snap.1-T1, initial, 380, 563
-recovered snap_scaffold_323-snap.1-T1, internal, 607, 742
-recovered snap_scaffold_323-snap.1-T1, internal, 3054, 3293
-recovered snap_scaffold_323-snap.1-T1, internal, 6525, 7001
Valid prediction for GeneMark_model.107308_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7767, rend_intergenic: 1161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8146
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 7767, rend_intergenic: 1161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support