-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3227-snap.1-T1
Couldn't classify 36, 47
Couldn't classify 744, 761
Sorry, prediction GeneMark_model.110886_t fails validation.
(GGG)	 AG	36-47	GT	AGG
(GAC)	 AG	73-87	GT	AGG
(GCC)	 AG	146-199	GT	CAG
(GAG)	 AG	372-530	GT	AGG
(GAG)	 AG	557-643	GT	GAG
(GAG)	 AG	668-721	GT	GAG
(AGA)	 AG	744-761	GT	AGG
-recovered GeneMark_model.110886_t, internal, 36, 47
-recovered GeneMark_model.110886_t, internal, 73, 87
-recovered GeneMark_model.110886_t, internal, 146, 199
-recovered GeneMark_model.110886_t, internal, 372, 530
-recovered GeneMark_model.110886_t, internal, 557, 643
-recovered GeneMark_model.110886_t, internal, 668, 721
-recovered GeneMark_model.110886_t, internal, 744, 761
Valid prediction for GlimmerHMM_glimmerT_63326-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 715, 937
Sorry, prediction Augustus_model.g42294.t1 fails validation.
(GTG)	 AG	715-937	GT	ATG
-recovered Augustus_model.g42294.t1, internal, 715, 937

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1047
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support