-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3224

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 913, 1009
Sorry, prediction GeneMark_model.110885_t fails validation.
(ATG)	 GC	567-672	GT	AGG
(AAC)	 AG	793-821	GT	AGG
(CAC)	 AG	913-1009	GT	GGG
-recovered GeneMark_model.110885_t, initial, 567, 672
-recovered GeneMark_model.110885_t, internal, 793, 821
-recovered GeneMark_model.110885_t, internal, 913, 1009
Valid prediction for GlimmerHMM_glimmerT_63325-T1
Couldn't classify 894, 1009
Sorry, prediction snap_scaffold_3224-snap.1-T1 fails validation.
(ATG)	 GC	567-642	GT	CGG
(AAC)	 AG	793-821	GT	AGG
(GGG)	 AG	894-1009	GT	GGG
-recovered snap_scaffold_3224-snap.1-T1, initial, 567, 642
-recovered snap_scaffold_3224-snap.1-T1, internal, 793, 821
-recovered snap_scaffold_3224-snap.1-T1, internal, 894, 1009

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1047
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support