-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3218

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3218-snap.2-T1
Couldn't classify 246, 289
Sorry, prediction GeneMark_model.110878_t fails validation.
(GGT)	 AG	246-289	GT	TGG
(AGA)	 AG	314-747	TC	AAT
-recovered GeneMark_model.110878_t, terminal, 314, 747
-recovered GeneMark_model.110878_t, internal, 246, 289
Valid prediction for snap_scaffold_3218-snap.1-T1
Valid prediction for GeneMark_model.110879_t
Couldn't classify 805, 915
Sorry, prediction Augustus_model.g42292.t1 fails validation.
(ATG)	 AC	454-645	GT	AGG
(CAT)	 AG	805-915	GT	AGG
-recovered Augustus_model.g42292.t1, initial, 454, 645
-recovered Augustus_model.g42292.t1, internal, 805, 915

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63322-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1048
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support