-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3214

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 400, 426
Couldn't classify 621, 742
Sorry, prediction GeneMark_model.110876_t fails validation.
(GGA)	 AG	400-426	GT	GAG
(AGT)	 AG	464-472	GT	GAG
(GGA)	 AG	512-526	GT	GGG
(GGA)	 AG	621-742	GT	AGG
add_exon() Sorry, GeneMark_model.110876_t 400-426-terminal-1 is invalid.
-recovered GeneMark_model.110876_t, terminal, 400, 426
-recovered GeneMark_model.110876_t, terminal, 464, 472
-recovered GeneMark_model.110876_t, internal, 400, 426
-recovered GeneMark_model.110876_t, internal, 464, 472
-recovered GeneMark_model.110876_t, internal, 512, 526
-recovered GeneMark_model.110876_t, internal, 621, 742

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1048
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support