-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3213

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3213-snap.1-T1
Couldn't classify 51, 66
Couldn't classify 758, 1006
Sorry, prediction GeneMark_model.110875_t fails validation.
(ATC)	 AG	51-66	GT	AGG
(ATG)	 AG	663-731	GT	AGG
(GAG)	 AG	758-1006	GT	GCG
-recovered GeneMark_model.110875_t, initial, 663, 731
-recovered GeneMark_model.110875_t, internal, 51, 66
-recovered GeneMark_model.110875_t, internal, 663, 731
-recovered GeneMark_model.110875_t, internal, 758, 1006

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1049
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support