-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3211

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 357
Sorry, prediction GeneMark_model.110874_t fails validation.
(GCC)	 AG	12-357	GT	GGG
-recovered GeneMark_model.110874_t, internal, 12, 357
Couldn't classify 1, 407
Sorry, prediction GlimmerHMM_glimmerT_63320-T1 fails validation.
(CAT)	 GA	1-407	AG	AAA

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 218, 272
Couldn't classify 678, 1033
Sorry, prediction snap_scaffold_3211-snap.1-T1 fails validation.
(GAA)	 AG	218-272	GT	AGG
(CCT)	 AG	678-1033	GT	ATG
-recovered snap_scaffold_3211-snap.1-T1, internal, 218, 272
-recovered snap_scaffold_3211-snap.1-T1, internal, 678, 1033

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1049
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support