-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3210

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 326, 343
Couldn't classify 877, 1009
Sorry, prediction GeneMark_model.110873_t fails validation.
(AGA)	 AG	326-343	GT	CAG
(AGA)	 AG	508-688	GT	CGG
(GGT)	 AG	713-736	GT	GGG
(AGA)	 AG	877-1009	GT	GGG
-recovered GeneMark_model.110873_t, internal, 326, 343
-recovered GeneMark_model.110873_t, internal, 508, 688
-recovered GeneMark_model.110873_t, internal, 713, 736
-recovered GeneMark_model.110873_t, internal, 877, 1009

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63319-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63319-T1 272-440-terminal-1 is invalid.
Couldn't classify 272, 354
Sorry, prediction Augustus_model.g42289.t1 fails validation.
(GAT)	 AG	272-354	GT	CTG
-recovered Augustus_model.g42289.t1, internal, 272, 354

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1050
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support