-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3206

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3206-snap.2-T1
Couldn't classify 72, 139
Couldn't classify 323, 431
Sorry, prediction GeneMark_model.110871_t fails validation.
(GAG)	 AG	72-139	GC	AGG
(GAG)	 AG	166-291	GT	GAG
(GAG)	 AG	323-431	GT	ATG
-recovered GeneMark_model.110871_t, internal, 72, 139
-recovered GeneMark_model.110871_t, internal, 166, 291
-recovered GeneMark_model.110871_t, internal, 323, 431

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 167
Couldn't classify 988, 999
Sorry, prediction snap_scaffold_3206-snap.1-T1 fails validation.
(GAG)	 AG	55-167	GT	TGG
(GCT)	 AG	420-533	GT	GTG
(GGG)	 AG	988-999	GT	AGG
-recovered snap_scaffold_3206-snap.1-T1, internal, 55, 167
-recovered snap_scaffold_3206-snap.1-T1, internal, 420, 533
-recovered snap_scaffold_3206-snap.1-T1, internal, 988, 999

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 997, rend_intergenic: 72  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1051
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 997, rend_intergenic: 72  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support