-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3204

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63317-T1
Couldn't classify 309, 481
Couldn't classify 788, 953
Sorry, prediction snap_scaffold_3204-snap.1-T1 fails validation.
(TTC)	 AG	309-481	GT	GGG
(AGC)	 AG	788-953	GT	AGG
-recovered snap_scaffold_3204-snap.1-T1, internal, 309, 481
-recovered snap_scaffold_3204-snap.1-T1, internal, 788, 953
Couldn't classify 309, 481
Couldn't classify 851, 953
Sorry, prediction Augustus_model.g42287.t1 fails validation.
(TTC)	 AG	309-481	GT	GGG
(GTA)	 AG	851-953	GT	AGG
-recovered Augustus_model.g42287.t1, internal, 309, 481
-recovered Augustus_model.g42287.t1, internal, 851, 953

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 135, 219
Couldn't classify 534, 635
Sorry, prediction GeneMark_model.110870_t fails validation.
(CAC)	 AG	135-219	GT	ATG
(GAG)	 AG	258-511	GC	GGG
(GGA)	 AG	534-635	GT	GGG
-recovered GeneMark_model.110870_t, internal, 135, 219
-recovered GeneMark_model.110870_t, internal, 258, 511
-recovered GeneMark_model.110870_t, internal, 534, 635
Valid prediction for GlimmerHMM_glimmerT_63318-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1051
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support