-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61691-T1
Valid prediction for Augustus_model.g41009.t1
Valid prediction for snap_scaffold_320-snap.2-T1
Valid prediction for GeneMark_model.107298_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 37
Sorry, prediction GeneMark_model.107299_t fails validation.
(GGG)	 AG	32-37	GT	AGG
(GCG)	 AG	171-221	GT	AGG
(GGA)	 AG	269-280	GT	ATG
(CAG)	 AG	475-629	GT	AGG
(GTC)	 AG	661-721	GT	CAG
(AGA)	 AG	851-880	GT	GGG
(AAA)	 AG	904-1104	GC	GAG
(AGA)	 AG	1127-1213	GT	GAG
(AAG)	 AG	1240-1447	GT	CTG
(TGT)	 AG	1709-1807	GT	TTG
(ACC)	 AG	1845-1916	TT	GAT
-recovered GeneMark_model.107299_t, terminal, 1845, 1916
-recovered GeneMark_model.107299_t, internal, 32, 37
-recovered GeneMark_model.107299_t, internal, 171, 221
-recovered GeneMark_model.107299_t, internal, 269, 280
-recovered GeneMark_model.107299_t, internal, 475, 629
-recovered GeneMark_model.107299_t, internal, 661, 721
-recovered GeneMark_model.107299_t, internal, 851, 880
-recovered GeneMark_model.107299_t, internal, 904, 1104
-recovered GeneMark_model.107299_t, internal, 1127, 1213
-recovered GeneMark_model.107299_t, internal, 1240, 1447
-recovered GeneMark_model.107299_t, internal, 1709, 1807
Couldn't classify 7523, 7752
Sorry, prediction Augustus_model.g41008.t1 fails validation.
(ATG)	 GC	6563-6590	GT	ATG
(GTG)	 AG	6751-6900	GT	AGG
(GTT)	 AG	7230-7328	GT	AGG
(GTC)	 AG	7523-7752	GT	AGG
-recovered Augustus_model.g41008.t1, initial, 6563, 6590
-recovered Augustus_model.g41008.t1, internal, 6751, 6900
-recovered Augustus_model.g41008.t1, internal, 7230, 7328
-recovered Augustus_model.g41008.t1, internal, 7523, 7752
Valid prediction for snap_scaffold_320-snap.1-T1
Valid prediction for snap_scaffold_320-snap.3-T1
Couldn't classify 7970, 8162
Sorry, prediction GeneMark_model.107297_t fails validation.
(ATG)	 AA	6609-6620	GT	AAG
(GTG)	 AG	6751-6900	GT	AGG
(GCC)	 AG	7248-7328	GT	AGG
(GTC)	 AG	7523-7569	GT	GAG
(GGA)	 AG	7630-7752	GT	AGG
(GAA)	 AG	7970-8162	GC	AAG
-recovered GeneMark_model.107297_t, initial, 6609, 6620
-recovered GeneMark_model.107297_t, internal, 6751, 6900
-recovered GeneMark_model.107297_t, internal, 7248, 7328
-recovered GeneMark_model.107297_t, internal, 7523, 7569
-recovered GeneMark_model.107297_t, internal, 7630, 7752
-recovered GeneMark_model.107297_t, internal, 7970, 8162
Valid prediction for GlimmerHMM_glimmerT_61690-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6482, rend_intergenic: 684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8172
-exon list size: 65


building trellis

1.5    
3.0    
4.5    
6.0    
7.5    
9.0    
10.4    
11.9    
13.4    
14.9    
16.4    
17.9    
19.4    
20.9    
22.4    
23.9    
25.4    
26.9    
28.4    
29.9    
31.3    
32.8    
34.3    
35.8    
37.3    
38.8    
40.3    
41.8    
43.3    
44.8    
46.3    
47.8    
49.3    
50.7    
52.2    
53.7    
55.2    
56.7    
58.2    
59.7    
61.2    
62.7    
64.2    
65.7    
67.2    
68.7    
70.1    
71.6    
73.1    
74.6    
76.1    
77.6    
79.1    
80.6    
82.1    
83.6    
85.1    
86.6    
88.1    
89.6    
91.0    
92.5    
94.0    
95.5    
97.0    
98.5    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 6482, rend_intergenic: 684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support