-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3198

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 28, 147
Couldn't classify 485, 554
Sorry, prediction snap_scaffold_3198-snap.1-T1 fails validation.
(AAC)	 AG	28-147	GT	GGG
(ATG)	 AG	485-554	GT	TGG
-recovered snap_scaffold_3198-snap.1-T1, initial, 485, 554
-recovered snap_scaffold_3198-snap.1-T1, internal, 28, 147
-recovered snap_scaffold_3198-snap.1-T1, internal, 485, 554
Couldn't classify 21, 140
Couldn't classify 989, 1020
Sorry, prediction GeneMark_model.110866_t fails validation.
(GAA)	 AG	21-140	GT	AAG
(CAA)	 AG	848-913	GT	CCG
(GCT)	 AG	989-1020	GT	GGG
-recovered GeneMark_model.110866_t, internal, 21, 140
-recovered GeneMark_model.110866_t, internal, 848, 913
-recovered GeneMark_model.110866_t, internal, 989, 1020
Valid prediction for GlimmerHMM_glimmerT_63315-T1
Couldn't classify 1, 258
Sorry, prediction Augustus_model.g42286.t1 fails validation.
(AAC)	 GG	1-258	AG	AAA

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1052
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support