-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3196

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 304, 309
Sorry, prediction GeneMark_model.110865_t fails validation.
(AGA)	 AG	304-309	GT	AGG
(AGA)	 AG	336-395	GT	GGG
(GGA)	 AG	418-429	GT	GGG
(AGA)	 AG	454-465	GT	GTG
(GGA)	 AG	486-494	GT	GAG
(AGA)	 AG	538-549	GT	GTG
(AGA)	 AG	572-613	GT	ACG
(AGA)	 AG	640-645	GT	ACG
(AGA)	 AG	672-683	GT	ATG
(AGG)	 AG	712-717	GT	ATG
(GGA)	 AG	740-785	AG	GAA
-recovered GeneMark_model.110865_t, terminal, 740, 785
-recovered GeneMark_model.110865_t, internal, 304, 309
-recovered GeneMark_model.110865_t, internal, 336, 395
-recovered GeneMark_model.110865_t, internal, 418, 429
-recovered GeneMark_model.110865_t, internal, 454, 465
-recovered GeneMark_model.110865_t, internal, 486, 494
-recovered GeneMark_model.110865_t, internal, 538, 549
-recovered GeneMark_model.110865_t, internal, 572, 613
-recovered GeneMark_model.110865_t, internal, 640, 645
-recovered GeneMark_model.110865_t, internal, 672, 683
-recovered GeneMark_model.110865_t, internal, 712, 717

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1052
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support