-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 223, 332
Sorry, prediction GlimmerHMM_glimmerT_63314-T1 fails validation.
(ACC)	 AG	223-332	GT	AGG
(GCC)	 AG	499-645	GT	AGG
(CCA)	 AG	741-827	GA	AGG
-recovered GlimmerHMM_glimmerT_63314-T1, terminal, 741, 827
-recovered GlimmerHMM_glimmerT_63314-T1, internal, 223, 332
-recovered GlimmerHMM_glimmerT_63314-T1, internal, 499, 645
Couldn't classify 188, 332
Couldn't classify 741, 823
Sorry, prediction Augustus_model.g42285.t1 fails validation.
(CCA)	 AG	188-332	GT	AGG
(GCC)	 AG	499-645	GT	AGG
(CCA)	 AG	741-823	GT	AGG
-recovered Augustus_model.g42285.t1, internal, 188, 332
-recovered Augustus_model.g42285.t1, internal, 499, 645
-recovered Augustus_model.g42285.t1, internal, 741, 823
Couldn't classify 22, 332
Couldn't classify 741, 823
Sorry, prediction GeneMark_model.110864_t fails validation.
(GTC)	 AG	22-332	GT	AGG
(AAG)	 AG	359-379	GT	ACG
(GCC)	 AG	499-578	GT	GAG
(GAC)	 AG	600-645	GT	AGG
(CCA)	 AG	741-823	GT	AGG
-recovered GeneMark_model.110864_t, internal, 22, 332
-recovered GeneMark_model.110864_t, internal, 359, 379
-recovered GeneMark_model.110864_t, internal, 499, 578
-recovered GeneMark_model.110864_t, internal, 600, 645
-recovered GeneMark_model.110864_t, internal, 741, 823
Couldn't classify 223, 332
Couldn't classify 741, 823
Sorry, prediction snap_scaffold_3195-snap.1-T1 fails validation.
(ACC)	 AG	223-332	GT	AGG
(CCA)	 AG	741-823	GT	AGG
-recovered snap_scaffold_3195-snap.1-T1, internal, 223, 332
-recovered snap_scaffold_3195-snap.1-T1, internal, 741, 823

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1052
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support