-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_319

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_319-snap.3-T1
Valid prediction for snap_scaffold_319-snap.1-T1
add_exon() Sorry, snap_scaffold_319-snap.1-T1 364-690-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_319-snap.1-T1 1214-1368-terminal-1 is invalid.
Valid prediction for snap_scaffold_319-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61689-T1
Couldn't classify 447, 621
Sorry, prediction GeneMark_model.107293_t fails validation.
(GCC)	 AG	447-621	GT	CTG
(ACA)	 AG	892-921	GT	TGG
(AGG)	 AG	1214-1368	AA	AAA
-recovered GeneMark_model.107293_t, terminal, 1214, 1368
-recovered GeneMark_model.107293_t, internal, 447, 621
-recovered GeneMark_model.107293_t, internal, 892, 921
Valid prediction for GlimmerHMM_glimmerT_61688-T1
Valid prediction for Augustus_model.g41007.t1
Valid prediction for Augustus_model.g41006.t1
add_exon() Sorry, Augustus_model.g41006.t1 364-613-initial-1 is invalid.
Couldn't classify 5135, 5458
Sorry, prediction pasa_asmbl_40897.p1 fails validation.
(CCC)	 CG	5135-5458	GT	CCG

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107296_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8180
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support