-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3189

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 355, 378
Couldn't classify 523, 584
Sorry, prediction GeneMark_model.110861_t fails validation.
(AGA)	 AG	355-378	GT	AAG
(AGA)	 AG	401-424	GT	AGG
(AGA)	 AG	455-460	GT	AGG
(AGG)	 AG	491-502	GT	AGG
(GCA)	 AG	523-584	GT	GAG
-recovered GeneMark_model.110861_t, internal, 355, 378
-recovered GeneMark_model.110861_t, internal, 401, 424
-recovered GeneMark_model.110861_t, internal, 455, 460
-recovered GeneMark_model.110861_t, internal, 491, 502
-recovered GeneMark_model.110861_t, internal, 523, 584

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1053
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support