-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3185

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1023, 1043
Sorry, prediction GeneMark_model.110859_t fails validation.
(ATG)	 AG	74-91	GT	AGG
(GAG)	 AG	829-834	GT	GGG
(GGA)	 AG	885-959	GC	GAG
(CGA)	 AG	983-997	GC	GAG
(AGA)	 AG	1023-1043	GC	GAG
-recovered GeneMark_model.110859_t, initial, 74, 91
-recovered GeneMark_model.110859_t, internal, 74, 91
-recovered GeneMark_model.110859_t, internal, 829, 834
-recovered GeneMark_model.110859_t, internal, 885, 959
-recovered GeneMark_model.110859_t, internal, 983, 997
-recovered GeneMark_model.110859_t, internal, 1023, 1043

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1054
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support