-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 229, 234
Couldn't classify 997, 1008
Sorry, prediction GeneMark_model.110858_t fails validation.
(AGA)	 AG	229-234	GT	AGG
(ACA)	 AG	255-290	GT	AGG
(AGA)	 AG	315-332	GT	AGG
(AGA)	 AG	357-374	GT	AGG
(AGG)	 AG	395-412	GT	AGG
(ATA)	 AG	435-476	GT	AGG
(ACA)	 AG	497-532	GT	AGG
(AGA)	 AG	557-574	GT	AGG
(GGG)	 AG	903-923	GT	AGG
(TGA)	 AG	997-1008	GT	AGG
-recovered GeneMark_model.110858_t, internal, 229, 234
-recovered GeneMark_model.110858_t, internal, 255, 290
-recovered GeneMark_model.110858_t, internal, 315, 332
-recovered GeneMark_model.110858_t, internal, 357, 374
-recovered GeneMark_model.110858_t, internal, 395, 412
-recovered GeneMark_model.110858_t, internal, 435, 476
-recovered GeneMark_model.110858_t, internal, 497, 532
-recovered GeneMark_model.110858_t, internal, 557, 574
-recovered GeneMark_model.110858_t, internal, 903, 923
-recovered GeneMark_model.110858_t, internal, 997, 1008

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 223, 367
Sorry, prediction GlimmerHMM_glimmerT_63312-T1 fails validation.
(ACA)	 AG	223-367	GT	AGG
(GGA)	 AG	855-998	GT	GAG
-recovered GlimmerHMM_glimmerT_63312-T1, terminal, 855, 998
-recovered GlimmerHMM_glimmerT_63312-T1, internal, 223, 367
-recovered GlimmerHMM_glimmerT_63312-T1, internal, 855, 998
Couldn't classify 227, 367
Couldn't classify 855, 960
Sorry, prediction snap_scaffold_3183-snap.1-T1 fails validation.
(GTG)	 AG	227-367	GT	AGG
(GGA)	 AG	855-960	GT	AGG
-recovered snap_scaffold_3183-snap.1-T1, internal, 227, 367
-recovered snap_scaffold_3183-snap.1-T1, internal, 855, 960
Valid prediction for CodingQuarry_transcript_46403-T1
Couldn't classify 223, 367
Couldn't classify 855, 960
Sorry, prediction Augustus_model.g42283.t1 fails validation.
(ACA)	 AG	223-367	GT	AGG
(GGA)	 AG	855-960	GT	AGG
-recovered Augustus_model.g42283.t1, internal, 223, 367
-recovered Augustus_model.g42283.t1, internal, 855, 960

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1054
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support