-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_318

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107290_t
Valid prediction for GeneMark_model.107288_t
Couldn't classify 8082, 8139
Sorry, prediction GeneMark_model.107292_t fails validation.
(ATG)	 AC	7421-7509	GT	CTG
(AGA)	 AG	7570-7611	GC	GAG
(GGA)	 AG	7633-7791	GT	AGG
(ACA)	 AG	7818-7850	GT	GAG
(GGA)	 AG	7876-7928	GT	GAG
(GGC)	 AG	8082-8139	GT	GGG
-recovered GeneMark_model.107292_t, initial, 7421, 7509
-recovered GeneMark_model.107292_t, internal, 7570, 7611
-recovered GeneMark_model.107292_t, internal, 7633, 7791
-recovered GeneMark_model.107292_t, internal, 7818, 7850
-recovered GeneMark_model.107292_t, internal, 7876, 7928
-recovered GeneMark_model.107292_t, internal, 8082, 8139
Couldn't classify 4398, 4461
Sorry, prediction snap_scaffold_318-snap.3-T1 fails validation.
(GAG)	 AG	4398-4461	GT	TTG
(ACA)	 AG	5430-5531	GT	AGG
(TCG)	 AG	6472-6555	GT	CAG
(TCT)	 AG	8071-8159	AC	GAA
-recovered snap_scaffold_318-snap.3-T1, terminal, 8071, 8159
-recovered snap_scaffold_318-snap.3-T1, internal, 4398, 4461
-recovered snap_scaffold_318-snap.3-T1, internal, 5430, 5531
-recovered snap_scaffold_318-snap.3-T1, internal, 6472, 6555

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107289_t
Couldn't classify 28, 203
Sorry, prediction snap_scaffold_318-snap.2-T1 fails validation.
(TGA)	 AG	28-203	GT	TTG
(GTG)	 AG	1090-1176	GT	CAG
(CGA)	 AG	1685-1857	GT	AAG
(AAA)	 AG	3795-4136	GT	CCG
(AGC)	 AG	4256-4405	GT	AGG
(ACC)	 AG	5411-5510	GT	GAG
-recovered snap_scaffold_318-snap.2-T1, terminal, 5411, 5510
-recovered snap_scaffold_318-snap.2-T1, internal, 28, 203
-recovered snap_scaffold_318-snap.2-T1, internal, 1090, 1176
-recovered snap_scaffold_318-snap.2-T1, internal, 1685, 1857
-recovered snap_scaffold_318-snap.2-T1, internal, 3795, 4136
-recovered snap_scaffold_318-snap.2-T1, internal, 4256, 4405
-recovered snap_scaffold_318-snap.2-T1, internal, 5411, 5510
Couldn't classify 6067, 6142
Sorry, prediction snap_scaffold_318-snap.1-T1 fails validation.
(ATG)	 AC	5592-5802	GT	AGG
(CTC)	 AG	6067-6142	GT	TGG
-recovered snap_scaffold_318-snap.1-T1, initial, 5592, 5802
-recovered snap_scaffold_318-snap.1-T1, internal, 6067, 6142
Valid prediction for GeneMark_model.107291_t
Couldn't classify 1090, 1176
Sorry, prediction GlimmerHMM_glimmerT_61687-T1 fails validation.
(GTG)	 AG	1090-1176	GT	CAG
(CGA)	 AG	1685-1865	GT	ATG
(CCA)	 AG	3791-4188	GG	GAG
-recovered GlimmerHMM_glimmerT_61687-T1, terminal, 3791, 4188
-recovered GlimmerHMM_glimmerT_61687-T1, internal, 1090, 1176
-recovered GlimmerHMM_glimmerT_61687-T1, internal, 1685, 1865
Couldn't classify 7266, 7325
Sorry, prediction GeneMark_model.107287_t fails validation.
(ATG)	 AC	6831-6877	GT	GGG
(GGG)	 AG	7090-7182	GT	GTG
(GGA)	 AG	7207-7242	GT	AGG
(GGG)	 AG	7266-7325	GT	GAG
-recovered GeneMark_model.107287_t, initial, 6831, 6877
-recovered GeneMark_model.107287_t, internal, 7090, 7182
-recovered GeneMark_model.107287_t, internal, 7207, 7242
-recovered GeneMark_model.107287_t, internal, 7266, 7325

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8155, rend_intergenic: 4398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8182
-exon list size: 82


building trellis

1.2    
2.4    
3.6    
4.8    
6.0    
7.1    
8.3    
9.5    
10.7    
11.9    
13.1    
14.3    
15.5    
16.7    
17.9    
19.0    
20.2    
21.4    
22.6    
23.8    
25.0    
26.2    
27.4    
28.6    
29.8    
31.0    
32.1    
33.3    
34.5    
35.7    
36.9    
38.1    
39.3    
40.5    
41.7    
42.9    
44.0    
45.2    
46.4    
47.6    
48.8    
50.0    
51.2    
52.4    
53.6    
54.8    
56.0    
57.1    
58.3    
59.5    
60.7    
61.9    
63.1    
64.3    
65.5    
66.7    
67.9    
69.0    
70.2    
71.4    
72.6    
73.8    
75.0    
76.2    
77.4    
78.6    
79.8    
81.0    
82.1    
83.3    
84.5    
85.7    
86.9    
88.1    
89.3    
90.5    
91.7    
92.9    
94.0    
95.2    
96.4    
97.6    
98.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8155, rend_intergenic: 4398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support