-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3167

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63307-T1
Valid prediction for snap_scaffold_3167-snap.2-T1
Couldn't classify 103, 256
Sorry, prediction snap_scaffold_3167-snap.1-T1 fails validation.
(TGA)	 AG	103-256	GT	AGG
(CAG)	 AG	290-389	CC	AGC
-recovered snap_scaffold_3167-snap.1-T1, terminal, 290, 389
-recovered snap_scaffold_3167-snap.1-T1, internal, 103, 256

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 497, 960
Sorry, prediction Augustus_model.g42280.t1 fails validation.
(GGT)	 AG	497-960	GT	TGG
-recovered Augustus_model.g42280.t1, internal, 497, 960
Couldn't classify 497, 960
Sorry, prediction GeneMark_model.110851_t fails validation.
(GGT)	 AG	497-960	GT	TGG
-recovered GeneMark_model.110851_t, internal, 497, 960
Valid prediction for GlimmerHMM_glimmerT_63306-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1057
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support