-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3159

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9, 41
Couldn't classify 1002, 1044
Sorry, prediction GeneMark_model.110847_t fails validation.
(GGA)	 AG	9-41	GT	GGG
(GAG)	 AG	96-119	GT	AGG
(CAG)	 AG	366-530	GC	GGG
(AAA)	 AG	551-634	GT	GAG
(TGG)	 AG	1002-1044	GT	GCG
add_exon() Sorry, GeneMark_model.110847_t 551-634-terminal-1 is invalid.
-recovered GeneMark_model.110847_t, terminal, 551, 634
-recovered GeneMark_model.110847_t, internal, 9, 41
-recovered GeneMark_model.110847_t, internal, 96, 119
-recovered GeneMark_model.110847_t, internal, 366, 530
-recovered GeneMark_model.110847_t, internal, 551, 634
-recovered GeneMark_model.110847_t, internal, 1002, 1044

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1059
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support