-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3157

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 54
Couldn't classify 631, 681
Sorry, prediction GeneMark_model.110846_t fails validation.
(GCA)	 AG	10-54	GT	GAG
(TGT)	 AG	84-104	GT	GCG
(GGT)	 AG	124-144	GT	GCG
(TGT)	 AG	174-212	GT	CAG
(CGA)	 AG	236-334	GT	CAG
(GGA)	 AG	450-476	GT	AGG
(CGT)	 AG	574-582	GT	GGG
(CGC)	 AG	631-681	GT	AGG
-recovered GeneMark_model.110846_t, internal, 10, 54
-recovered GeneMark_model.110846_t, internal, 84, 104
-recovered GeneMark_model.110846_t, internal, 124, 144
-recovered GeneMark_model.110846_t, internal, 174, 212
-recovered GeneMark_model.110846_t, internal, 236, 334
-recovered GeneMark_model.110846_t, internal, 450, 476
-recovered GeneMark_model.110846_t, internal, 574, 582
-recovered GeneMark_model.110846_t, internal, 631, 681

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 340, 497
Couldn't classify 638, 807
Sorry, prediction Augustus_model.g42278.t1 fails validation.
(GGA)	 AG	340-497	GT	AGG
(TGG)	 AG	638-807	GT	GGG
-recovered Augustus_model.g42278.t1, internal, 340, 497
-recovered Augustus_model.g42278.t1, internal, 638, 807
Valid prediction for GlimmerHMM_glimmerT_63304-T1
Couldn't classify 340, 497
Couldn't classify 638, 807
Sorry, prediction snap_scaffold_3157-snap.1-T1 fails validation.
(GGA)	 AG	340-497	GT	AGG
(TGG)	 AG	638-807	GT	GGG
-recovered snap_scaffold_3157-snap.1-T1, internal, 340, 497
-recovered snap_scaffold_3157-snap.1-T1, internal, 638, 807

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1059
-exon list size: 18


building trellis

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35.0    
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45.0    
50.0    
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95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support