-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3156

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 712, 797
Sorry, prediction GlimmerHMM_glimmerT_63303-T1 fails validation.
(ATG)	 TG	410-623	GT	GGG
(ATG)	 AG	712-797	GT	TGG
-recovered GlimmerHMM_glimmerT_63303-T1, initial, 410, 623
add_exon() Sorry, GlimmerHMM_glimmerT_63303-T1 712-797-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_63303-T1, initial, 712, 797
-recovered GlimmerHMM_glimmerT_63303-T1, internal, 712, 797
Couldn't classify 216, 310
Couldn't classify 712, 797
Sorry, prediction GeneMark_model.110845_t fails validation.
(ACA)	 AG	216-310	GT	AGG
(CAG)	 AG	389-623	GT	GGG
(ATG)	 AG	712-797	GT	TGG
add_exon() Sorry, GeneMark_model.110845_t 712-797-initial-1 is invalid.
-recovered GeneMark_model.110845_t, initial, 712, 797
-recovered GeneMark_model.110845_t, internal, 216, 310
-recovered GeneMark_model.110845_t, internal, 389, 623
-recovered GeneMark_model.110845_t, internal, 712, 797
Couldn't classify 216, 310
Sorry, prediction Augustus_model.g42277.t1 fails validation.
(ACA)	 AG	216-310	GT	AGG
(GCA)	 AG	392-623	GT	GGG
(ATG)	 AG	712-797	GT	TGG
(GAT)	 AG	931-957	CT	AAC
add_exon() Sorry, Augustus_model.g42277.t1 712-797-initial-1 is invalid.
-recovered Augustus_model.g42277.t1, initial, 712, 797
-recovered Augustus_model.g42277.t1, terminal, 931, 957
-recovered Augustus_model.g42277.t1, internal, 216, 310
-recovered Augustus_model.g42277.t1, internal, 392, 623
-recovered Augustus_model.g42277.t1, internal, 712, 797
Couldn't classify 216, 310
Sorry, prediction snap_scaffold_3156-snap.1-T1 fails validation.
(ACA)	 AG	216-310	GT	AGG
(GCA)	 AG	392-623	GT	GGG
(ATG)	 AG	712-797	GT	TGG
(GAT)	 AG	931-957	CT	AAC
add_exon() Sorry, snap_scaffold_3156-snap.1-T1 712-797-initial-1 is invalid.
-recovered snap_scaffold_3156-snap.1-T1, initial, 712, 797
-recovered snap_scaffold_3156-snap.1-T1, terminal, 931, 957
-recovered snap_scaffold_3156-snap.1-T1, internal, 216, 310
-recovered snap_scaffold_3156-snap.1-T1, internal, 392, 623
-recovered snap_scaffold_3156-snap.1-T1, internal, 712, 797

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1059
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support