-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 50, 145
Couldn't classify 760, 860
Sorry, prediction Augustus_model.g42276.t1 fails validation.
(GAC)	 AG	50-145	GT	AGG
(AGG)	 AG	623-687	GT	CAG
(CTT)	 AG	760-860	GT	AGG
-recovered Augustus_model.g42276.t1, internal, 50, 145
-recovered Augustus_model.g42276.t1, internal, 623, 687
-recovered Augustus_model.g42276.t1, internal, 760, 860
Couldn't classify 38, 145
Couldn't classify 623, 687
Sorry, prediction GeneMark_model.110840_t fails validation.
(CCT)	 AG	38-145	GT	AGG
(AGG)	 AG	623-687	GT	CAG
-recovered GeneMark_model.110840_t, internal, 38, 145
-recovered GeneMark_model.110840_t, internal, 623, 687
Couldn't classify 27, 145
Couldn't classify 623, 687
Sorry, prediction snap_scaffold_3152-snap.1-T1 fails validation.
(TGG)	 AG	27-145	GT	AGG
(AGG)	 AG	623-687	GT	CAG
-recovered snap_scaffold_3152-snap.1-T1, internal, 27, 145
-recovered snap_scaffold_3152-snap.1-T1, internal, 623, 687

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1060
-exon list size: 8


building trellis

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20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support