-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3151

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 598, 778
Couldn't classify 937, 1009
Sorry, prediction Augustus_model.g42275.t1 fails validation.
(GTA)	 AG	598-778	GT	AGG
(ACT)	 AG	937-1009	GT	TGG
-recovered Augustus_model.g42275.t1, internal, 598, 778
-recovered Augustus_model.g42275.t1, internal, 937, 1009
Couldn't classify 598, 778
Couldn't classify 937, 1009
Sorry, prediction GeneMark_model.110839_t fails validation.
(GTA)	 AG	598-778	GT	AGG
(GGA)	 AG	827-861	GT	ATG
(ACT)	 AG	937-1009	GT	TGG
-recovered GeneMark_model.110839_t, internal, 598, 778
-recovered GeneMark_model.110839_t, internal, 827, 861
-recovered GeneMark_model.110839_t, internal, 937, 1009
Couldn't classify 598, 778
Couldn't classify 937, 1009
Sorry, prediction snap_scaffold_3151-snap.1-T1 fails validation.
(GTA)	 AG	598-778	GT	AGG
(ACT)	 AG	937-1009	GT	TGG
-recovered snap_scaffold_3151-snap.1-T1, internal, 598, 778
-recovered snap_scaffold_3151-snap.1-T1, internal, 937, 1009
Valid prediction for GlimmerHMM_glimmerT_63302-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63302-T1 598-782-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1060
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support