-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_315

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61684-T1
Couldn't classify 686, 828
Couldn't classify 8031, 8062
Sorry, prediction GeneMark_model.107277_t fails validation.
(AAA)	 AG	686-828	GT	GTG
(TGG)	 AG	953-1018	GT	GTG
(TGT)	 AG	1040-1228	GT	GGG
(TAC)	 AG	2534-2557	GT	AAG
(GGT)	 AG	4975-5154	GT	AGG
(GTT)	 AG	5180-5200	GT	GGG
(AAT)	 AG	5222-5227	GT	GGG
(GCT)	 AG	5250-5261	GT	GGG
(GGT)	 AG	5282-5311	GT	AGG
(GGT)	 AG	5343-5380	GT	GGG
(AAC)	 AG	8031-8062	GT	AGG
-recovered GeneMark_model.107277_t, internal, 686, 828
-recovered GeneMark_model.107277_t, internal, 953, 1018
-recovered GeneMark_model.107277_t, internal, 1040, 1228
-recovered GeneMark_model.107277_t, internal, 2534, 2557
-recovered GeneMark_model.107277_t, internal, 4975, 5154
-recovered GeneMark_model.107277_t, internal, 5180, 5200
-recovered GeneMark_model.107277_t, internal, 5222, 5227
-recovered GeneMark_model.107277_t, internal, 5250, 5261
-recovered GeneMark_model.107277_t, internal, 5282, 5311
-recovered GeneMark_model.107277_t, internal, 5343, 5380
-recovered GeneMark_model.107277_t, internal, 8031, 8062
Valid prediction for snap_scaffold_315-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8253
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support