-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3146

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 188, 217
Couldn't classify 724, 729
Sorry, prediction GeneMark_model.110836_t fails validation.
(CCT)	 AG	188-217	GT	CTG
(TCC)	 AG	255-274	GT	CTG
(GAG)	 AG	310-378	GT	GGG
(GAT)	 AG	409-417	GT	GGG
(GAG)	 AG	448-456	GT	GGG
(GAG)	 AG	479-508	GT	GGG
(AAG)	 AG	536-547	GT	GGG
(GAG)	 AG	570-620	GT	GAG
(GAG)	 AG	643-651	GT	GGG
(AGG)	 AG	672-677	GT	GGG
(AGG)	 AG	698-703	GT	GGG
(AGG)	 AG	724-729	GT	GGG
-recovered GeneMark_model.110836_t, internal, 188, 217
-recovered GeneMark_model.110836_t, internal, 255, 274
-recovered GeneMark_model.110836_t, internal, 310, 378
-recovered GeneMark_model.110836_t, internal, 409, 417
-recovered GeneMark_model.110836_t, internal, 448, 456
-recovered GeneMark_model.110836_t, internal, 479, 508
-recovered GeneMark_model.110836_t, internal, 536, 547
-recovered GeneMark_model.110836_t, internal, 570, 620
-recovered GeneMark_model.110836_t, internal, 643, 651
-recovered GeneMark_model.110836_t, internal, 672, 677
-recovered GeneMark_model.110836_t, internal, 698, 703
-recovered GeneMark_model.110836_t, internal, 724, 729

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1061
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support