-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 95, 253
Couldn't classify 815, 898
Sorry, prediction Augustus_model.g42273.t1 fails validation.
(GTA)	 AG	95-253	GT	TGG
(TTA)	 AG	815-898	GT	AGG
-recovered Augustus_model.g42273.t1, internal, 95, 253
-recovered Augustus_model.g42273.t1, internal, 815, 898
Couldn't classify 95, 253
Couldn't classify 848, 898
Sorry, prediction GeneMark_model.110835_t fails validation.
(GTA)	 AG	95-253	GT	TGG
(GAA)	 AG	848-898	GT	AGG
-recovered GeneMark_model.110835_t, internal, 95, 253
-recovered GeneMark_model.110835_t, internal, 848, 898
Valid prediction for GlimmerHMM_glimmerT_63299-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63299-T1 95-257-terminal-1 is invalid.
Couldn't classify 95, 229
Couldn't classify 815, 898
Sorry, prediction snap_scaffold_3145-snap.1-T1 fails validation.
(GTA)	 AG	95-229	GT	GAG
(TTA)	 AG	815-898	GT	AGG
add_exon() Sorry, snap_scaffold_3145-snap.1-T1 95-229-terminal-1 is invalid.
-recovered snap_scaffold_3145-snap.1-T1, terminal, 95, 229
-recovered snap_scaffold_3145-snap.1-T1, internal, 95, 229
-recovered snap_scaffold_3145-snap.1-T1, internal, 815, 898

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1061
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support