-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 400, 450
Couldn't classify 646, 716
Sorry, prediction GeneMark_model.110834_t fails validation.
(GGA)	 AG	400-450	GT	GAG
(AGG)	 AG	475-570	GT	AGG
(AGT)	 AG	591-623	GT	GCG
(AGA)	 AG	646-716	GT	AGG
-recovered GeneMark_model.110834_t, internal, 400, 450
-recovered GeneMark_model.110834_t, internal, 475, 570
-recovered GeneMark_model.110834_t, internal, 591, 623
-recovered GeneMark_model.110834_t, internal, 646, 716

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support