-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 47, 163
Couldn't classify 948, 1049
Sorry, prediction GeneMark_model.110833_t fails validation.
(AGC)	 AG	47-163	GT	CCG
(AGC)	 AG	195-398	GC	GAG
(AGC)	 AG	445-543	GT	ATG
(GGC)	 AG	624-707	GT	CAG
(GAG)	 AG	737-897	GT	GAG
(GAG)	 AG	948-1049	GT	AGG
add_exon() Sorry, GeneMark_model.110833_t 737-897-terminal-2 is invalid.
-recovered GeneMark_model.110833_t, terminal, 737, 897
-recovered GeneMark_model.110833_t, internal, 47, 163
-recovered GeneMark_model.110833_t, internal, 195, 398
-recovered GeneMark_model.110833_t, internal, 445, 543
-recovered GeneMark_model.110833_t, internal, 624, 707
-recovered GeneMark_model.110833_t, internal, 737, 897
-recovered GeneMark_model.110833_t, internal, 948, 1049
Valid prediction for GlimmerHMM_glimmerT_63298-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support