-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3140

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 92
Couldn't classify 769, 786
Sorry, prediction GeneMark_model.110832_t fails validation.
(AGA)	 AG	60-92	GT	CTG
(GGA)	 AG	116-190	GT	GGG
(ACT)	 AG	218-262	GT	GGG
(AGA)	 AG	301-351	GT	TTG
(AGG)	 AG	489-566	GT	GGG
(AGA)	 AG	600-620	GT	GGG
(AGG)	 AG	654-671	GT	GGG
(GGA)	 AG	705-746	GT	ATG
(GAA)	 AG	769-786	GT	GAG
-recovered GeneMark_model.110832_t, internal, 60, 92
-recovered GeneMark_model.110832_t, internal, 116, 190
-recovered GeneMark_model.110832_t, internal, 218, 262
-recovered GeneMark_model.110832_t, internal, 301, 351
-recovered GeneMark_model.110832_t, internal, 489, 566
-recovered GeneMark_model.110832_t, internal, 600, 620
-recovered GeneMark_model.110832_t, internal, 654, 671
-recovered GeneMark_model.110832_t, internal, 705, 746
-recovered GeneMark_model.110832_t, internal, 769, 786

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support