-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3139

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9, 87
Sorry, prediction GeneMark_model.110831_t fails validation.
(CCC)	 AG	9-87	GT	AGG
(ACT)	 AG	539-697	GC	GAG
(GGA)	 AG	799-813	GC	GAG
(CAT)	 AG	839-893	AG	GAA
-recovered GeneMark_model.110831_t, terminal, 839, 893
-recovered GeneMark_model.110831_t, internal, 9, 87
-recovered GeneMark_model.110831_t, internal, 539, 697
-recovered GeneMark_model.110831_t, internal, 799, 813

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 8


building trellis

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20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support