-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3137

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110827_t
add_exon() Sorry, GeneMark_model.110827_t 233-449-terminal-1 is invalid.
Couldn't classify 220, 438
Sorry, prediction snap_scaffold_3137-snap.1-T1 fails validation.
(GAC)	 AG	220-438	GT	TTG
-recovered snap_scaffold_3137-snap.1-T1, internal, 220, 438

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 105, 122
Sorry, prediction GeneMark_model.110828_t fails validation.
(TGA)	 AG	105-122	GT	GCG
(AGA)	 AG	179-193	GT	GGG
(AGA)	 AG	218-235	GT	GAG
(AGA)	 AG	398-412	GT	GAG
(GGA)	 AG	434-506	AG	AAA
-recovered GeneMark_model.110828_t, terminal, 434, 506
-recovered GeneMark_model.110828_t, internal, 105, 122
-recovered GeneMark_model.110828_t, internal, 179, 193
-recovered GeneMark_model.110828_t, internal, 218, 235
-recovered GeneMark_model.110828_t, internal, 398, 412

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support