-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3131

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 65, 121
Couldn't classify 974, 983
Sorry, prediction GeneMark_model.110825_t fails validation.
(GTG)	 AG	65-121	GT	CAG
(GTG)	 AG	145-201	GT	CAG
(GTG)	 AG	225-239	GT	CAG
(GTG)	 AG	263-319	GT	CAG
(AGG)	 AG	341-361	GT	CAG
(GTG)	 AG	385-401	GT	CAG
(TGG)	 AG	974-983	GT	AGG
-recovered GeneMark_model.110825_t, internal, 65, 121
-recovered GeneMark_model.110825_t, internal, 145, 201
-recovered GeneMark_model.110825_t, internal, 225, 239
-recovered GeneMark_model.110825_t, internal, 263, 319
-recovered GeneMark_model.110825_t, internal, 341, 361
-recovered GeneMark_model.110825_t, internal, 385, 401
-recovered GeneMark_model.110825_t, internal, 974, 983

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1062
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support