-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_313

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61679-T1
Valid prediction for snap_scaffold_313-snap.1-T1
Valid prediction for GeneMark_model.107273_t
Couldn't classify 1179, 1290
Sorry, prediction Augustus_model.g41004.t1 fails validation.
(TAT)	 AG	1179-1290	GT	AGG
(GTG)	 AG	1969-2076	GT	AGG
(AGC)	 AG	2497-2657	GT	AGG
(GTC)	 AG	2851-2932	GT	AGG
(TGG)	 AG	3413-3571	GT	AGG
(GAT)	 AG	3742-3888	GT	AGG
(CTG)	 AG	3991-4083	GT	AGG
(GGC)	 AG	4258-4372	GT	GGG
(GTA)	 AG	4636-4838	GT	GGG
(GTG)	 AG	5223-5438	GG	AGG
-recovered Augustus_model.g41004.t1, terminal, 5223, 5438
-recovered Augustus_model.g41004.t1, internal, 1179, 1290
-recovered Augustus_model.g41004.t1, internal, 1969, 2076
-recovered Augustus_model.g41004.t1, internal, 2497, 2657
-recovered Augustus_model.g41004.t1, internal, 2851, 2932
-recovered Augustus_model.g41004.t1, internal, 3413, 3571
-recovered Augustus_model.g41004.t1, internal, 3742, 3888
-recovered Augustus_model.g41004.t1, internal, 3991, 4083
-recovered Augustus_model.g41004.t1, internal, 4258, 4372
-recovered Augustus_model.g41004.t1, internal, 4636, 4838
Couldn't classify 733, 803
Sorry, prediction GeneMark_model.107271_t fails validation.
(GAC)	 AG	733-803	GT	AGG
(ACA)	 AG	1193-1290	GT	AGG
(GTG)	 AG	1969-2076	GT	AGG
(TTC)	 AG	2485-2604	GT	AGG
(CCA)	 AG	2631-2657	GT	AGG
(TTT)	 AG	2773-2778	CG	AAC
-recovered GeneMark_model.107271_t, terminal, 2773, 2778
-recovered GeneMark_model.107271_t, internal, 733, 803
-recovered GeneMark_model.107271_t, internal, 1193, 1290
-recovered GeneMark_model.107271_t, internal, 1969, 2076
-recovered GeneMark_model.107271_t, internal, 2485, 2604
-recovered GeneMark_model.107271_t, internal, 2631, 2657
Valid prediction for GlimmerHMM_glimmerT_61680-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8258
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support