-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3127

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 104, 124
Couldn't classify 897, 1039
Sorry, prediction GeneMark_model.110824_t fails validation.
(GGA)	 AG	104-124	GT	AGG
(GAT)	 AG	172-444	GT	GAG
(ACA)	 AG	468-479	GT	AAG
(ACA)	 AG	503-514	GT	GAG
(AGA)	 AG	536-565	GT	GAG
(ACA)	 AG	616-627	GT	GAG
(AGA)	 AG	657-701	GT	GAG
(AGA)	 AG	723-857	GT	AGG
(GAT)	 AG	897-1039	GT	GGG
-recovered GeneMark_model.110824_t, internal, 104, 124
-recovered GeneMark_model.110824_t, internal, 172, 444
-recovered GeneMark_model.110824_t, internal, 468, 479
-recovered GeneMark_model.110824_t, internal, 503, 514
-recovered GeneMark_model.110824_t, internal, 536, 565
-recovered GeneMark_model.110824_t, internal, 616, 627
-recovered GeneMark_model.110824_t, internal, 657, 701
-recovered GeneMark_model.110824_t, internal, 723, 857
-recovered GeneMark_model.110824_t, internal, 897, 1039

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 995, 1064
Sorry, prediction Augustus_model.g42269.t1 fails validation.
(GTG)	 AG	995-1064		CT

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1064
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support