-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3126

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47, 121
Couldn't classify 812, 817
Sorry, prediction GeneMark_model.110823_t fails validation.
(GGA)	 AG	47-121	GT	GGG
(GGA)	 AG	333-347	GT	GAG
(GGG)	 AG	607-615	GT	AGG
(GGG)	 AG	686-694	GT	AAG
(GGG)	 AG	716-724	GT	AGG
(GGG)	 AG	746-754	GT	AGG
(GGG)	 AG	776-784	GT	AGG
(TAG)	 AG	812-817	GT	AGG
-recovered GeneMark_model.110823_t, internal, 47, 121
-recovered GeneMark_model.110823_t, internal, 333, 347
-recovered GeneMark_model.110823_t, internal, 607, 615
-recovered GeneMark_model.110823_t, internal, 686, 694
-recovered GeneMark_model.110823_t, internal, 716, 724
-recovered GeneMark_model.110823_t, internal, 746, 754
-recovered GeneMark_model.110823_t, internal, 776, 784
-recovered GeneMark_model.110823_t, internal, 812, 817

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1064
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support