-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_312

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8020, 8165
Sorry, prediction snap_scaffold_312-snap.2-T1 fails validation.
(ATG)	 GG	4827-5027	GT	AGG
(CCT)	 AG	7636-7844	GT	GGG
(AGT)	 AG	8020-8165	GT	CGG
-recovered snap_scaffold_312-snap.2-T1, initial, 4827, 5027
-recovered snap_scaffold_312-snap.2-T1, internal, 7636, 7844
-recovered snap_scaffold_312-snap.2-T1, internal, 8020, 8165
Valid prediction for GlimmerHMM_glimmerT_61677-T1
Couldn't classify 8225, 8248
Sorry, prediction GeneMark_model.107270_t fails validation.
(ATG)	 TT	8087-8199	GT	GAG
(TGT)	 AG	8225-8248	GC	AGG
-recovered GeneMark_model.107270_t, initial, 8087, 8199
-recovered GeneMark_model.107270_t, internal, 8225, 8248
Valid prediction for GeneMark_model.107269_t
Valid prediction for Augustus_model.g41003.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_312-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61676-T1
Couldn't classify 7585, 7673
Sorry, prediction GeneMark_model.107268_t fails validation.
(ATG)	 AT	4688-4749	GT	CAG
(GCA)	 AG	4773-4802	GT	CGG
(CAC)	 AG	5269-5301	GT	GCG
(GGT)	 AG	5388-5400	GT	GAG
(GAG)	 AG	6962-7066	GT	AGG
(CTC)	 AG	7585-7673	GT	AAG
-recovered GeneMark_model.107268_t, initial, 4688, 4749
-recovered GeneMark_model.107268_t, internal, 4773, 4802
-recovered GeneMark_model.107268_t, internal, 5269, 5301
-recovered GeneMark_model.107268_t, internal, 5388, 5400
-recovered GeneMark_model.107268_t, internal, 6962, 7066
-recovered GeneMark_model.107268_t, internal, 7585, 7673
Couldn't classify 124, 340
Sorry, prediction GlimmerHMM_glimmerT_61678-T1 fails validation.
(GGC)	 AG	124-340	GT	TGG
(CTC)	 AG	2765-2840	GT	GAG
(CCT)	 AG	2922-2980	GG	GAG
-recovered GlimmerHMM_glimmerT_61678-T1, terminal, 2922, 2980
-recovered GlimmerHMM_glimmerT_61678-T1, internal, 124, 340
-recovered GlimmerHMM_glimmerT_61678-T1, internal, 2765, 2840

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 4827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8264
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7801, rend_intergenic: 4827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support