-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3119

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 472, 797
Sorry, prediction snap_scaffold_3119-snap.1-T1 fails validation.
(AGT)	 AG	472-797	GT	CAG
-recovered snap_scaffold_3119-snap.1-T1, internal, 472, 797
Couldn't classify 472, 1046
Sorry, prediction GeneMark_model.110816_t fails validation.
(AGT)	 AG	472-1046	GC	CAG
-recovered GeneMark_model.110816_t, internal, 472, 1046
Valid prediction for GlimmerHMM_glimmerT_63293-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1065
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support