-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3116

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3116-snap.1-T1
Couldn't classify 104, 403
Couldn't classify 897, 1043
Sorry, prediction GeneMark_model.110815_t fails validation.
(AGA)	 AG	104-403	GT	GAG
(GAG)	 AG	429-593	GT	GAG
(AGG)	 AG	627-695	GT	GAG
(AGG)	 AG	729-755	GT	GAG
(AGG)	 AG	789-875	GT	GAG
(AGA)	 AG	897-1043	GT	GAG
-recovered GeneMark_model.110815_t, internal, 104, 403
-recovered GeneMark_model.110815_t, internal, 429, 593
-recovered GeneMark_model.110815_t, internal, 627, 695
-recovered GeneMark_model.110815_t, internal, 729, 755
-recovered GeneMark_model.110815_t, internal, 789, 875
-recovered GeneMark_model.110815_t, internal, 897, 1043

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1066
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support