-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 123, 435
Sorry, prediction snap_scaffold_3113-snap.1-T1 fails validation.
(CCC)	 AG	123-435	GT	AGG
(AGA)	 AG	468-548	CG	GAC
-recovered snap_scaffold_3113-snap.1-T1, terminal, 468, 548
-recovered snap_scaffold_3113-snap.1-T1, internal, 123, 435
Couldn't classify 104, 435
Couldn't classify 468, 538
Sorry, prediction GeneMark_model.110812_t fails validation.
(TGC)	 AG	104-435	GT	AGG
(AGA)	 AG	468-538	GT	AGG
-recovered GeneMark_model.110812_t, internal, 104, 435
-recovered GeneMark_model.110812_t, internal, 468, 538
Valid prediction for GlimmerHMM_glimmerT_63290-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63290-T1 123-489-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1066
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support