-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3111

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 45
Couldn't classify 893, 1027
Sorry, prediction GeneMark_model.110811_t fails validation.
(AGG)	 AG	40-45	GT	AGG
(AGC)	 AG	397-414	GT	AGG
(GCT)	 AG	437-491	GT	CTG
(GTC)	 AG	893-1027	GT	AGG
-recovered GeneMark_model.110811_t, internal, 40, 45
-recovered GeneMark_model.110811_t, internal, 397, 414
-recovered GeneMark_model.110811_t, internal, 437, 491
-recovered GeneMark_model.110811_t, internal, 893, 1027

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_63289-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1066
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support