-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_311

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1275, 1305
Couldn't classify 4874, 5015
Sorry, prediction snap_scaffold_311-snap.1-T1 fails validation.
(ACG)	 AG	1275-1305	GT	TGG
(GCC)	 AG	1770-1854	GT	AAG
(AAC)	 AG	4874-5015	GT	AGG
-recovered snap_scaffold_311-snap.1-T1, internal, 1275, 1305
-recovered snap_scaffold_311-snap.1-T1, internal, 1770, 1854
-recovered snap_scaffold_311-snap.1-T1, internal, 4874, 5015
Valid prediction for GeneMark_model.107266_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4095, 4166
Sorry, prediction GlimmerHMM_glimmerT_61675-T1 fails validation.
(GGC)	 AG	4095-4166	GT	TGG
(TTT)	 AG	6446-6552	GA	AGG
-recovered GlimmerHMM_glimmerT_61675-T1, terminal, 6446, 6552
-recovered GlimmerHMM_glimmerT_61675-T1, internal, 4095, 4166
Couldn't classify 229, 234
Sorry, prediction GeneMark_model.107267_t fails validation.
(AGA)	 AG	229-234	GT	GGG
(GAA)	 AG	262-1168	TG	AAT
-recovered GeneMark_model.107267_t, terminal, 262, 1168
-recovered GeneMark_model.107267_t, internal, 229, 234
Couldn't classify 3309, 3404
Sorry, prediction snap_scaffold_311-snap.2-T1 fails validation.
(GTT)	 AG	3309-3404	GT	TGG
(GCT)	 AG	3473-3947	GT	AGG
(TTT)	 AG	6446-6552	GA	AGG
-recovered snap_scaffold_311-snap.2-T1, terminal, 6446, 6552
-recovered snap_scaffold_311-snap.2-T1, internal, 3309, 3404
-recovered snap_scaffold_311-snap.2-T1, internal, 3473, 3947
Couldn't classify 7873, 7961
Sorry, prediction GeneMark_model.107265_t fails validation.
(ATG)	 AG	3262-3288	GT	ACG
(GTT)	 AG	3309-3415	GT	TGG
(GAG)	 AG	3515-3592	GT	GAG
(GAG)	 AG	3617-3640	GT	GAG
(AGT)	 AG	3663-3785	GC	GAG
(AGA)	 AG	3824-3947	GT	AGG
(CAG)	 AG	6453-6579	GT	GAG
(GGG)	 AG	7096-7177	GT	GGG
(AGA)	 AG	7202-7312	GT	ATG
(AAC)	 AG	7513-7572	GT	GTG
(AAA)	 AG	7794-7826	GT	AGG
(AAA)	 AG	7873-7961	GT	AAG
-recovered GeneMark_model.107265_t, initial, 3262, 3288
-recovered GeneMark_model.107265_t, terminal, 7794, 7826
-recovered GeneMark_model.107265_t, internal, 3262, 3288
-recovered GeneMark_model.107265_t, internal, 3309, 3415
-recovered GeneMark_model.107265_t, internal, 3515, 3592
-recovered GeneMark_model.107265_t, internal, 3617, 3640
-recovered GeneMark_model.107265_t, internal, 3663, 3785
-recovered GeneMark_model.107265_t, internal, 3824, 3947
-recovered GeneMark_model.107265_t, internal, 6453, 6579
-recovered GeneMark_model.107265_t, internal, 7096, 7177
-recovered GeneMark_model.107265_t, internal, 7202, 7312
-recovered GeneMark_model.107265_t, internal, 7513, 7572
-recovered GeneMark_model.107265_t, internal, 7794, 7826
-recovered GeneMark_model.107265_t, internal, 7873, 7961

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5015, rend_intergenic: 1734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8285
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5015, rend_intergenic: 1734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support