-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3107

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3107-snap.1-T1
add_exon() Sorry, snap_scaffold_3107-snap.1-T1 80-339-terminal-1 is invalid.
Valid prediction for Augustus_model.g42265.t1
add_exon() Sorry, Augustus_model.g42265.t1 80-339-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63288-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63288-T1 90-339-terminal-1 is invalid.
Couldn't classify 80, 335
Couldn't classify 357, 374
Sorry, prediction GeneMark_model.110809_t fails validation.
(GCC)	 AG	80-335	GT	AGG
(GAA)	 AG	357-374	GT	GCG
-recovered GeneMark_model.110809_t, internal, 80, 335
-recovered GeneMark_model.110809_t, internal, 357, 374

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1067
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support