-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3106

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 88
Couldn't classify 287, 483
Sorry, prediction GeneMark_model.110808_t fails validation.
(GAA)	 AG	44-88	GT	GAG
(TGG)	 AG	109-123	GT	GGG
(GAT)	 AG	156-200	GT	GAG
(GAG)	 AG	224-251	GT	AGG
(GCA)	 AG	287-483	GT	TTG
-recovered GeneMark_model.110808_t, internal, 44, 88
-recovered GeneMark_model.110808_t, internal, 109, 123
-recovered GeneMark_model.110808_t, internal, 156, 200
-recovered GeneMark_model.110808_t, internal, 224, 251
-recovered GeneMark_model.110808_t, internal, 287, 483

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1067
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support