-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 74, 172
Sorry, prediction GeneMark_model.110805_t fails validation.
(GAG)	 AG	74-172	GT	AGG
(CAG)	 AG	373-512	GT	GAG
(ACT)	 AG	646-681	GT	CCG
(GTG)	 AG	827-833	CA	GAC
-recovered GeneMark_model.110805_t, terminal, 827, 833
-recovered GeneMark_model.110805_t, internal, 74, 172
-recovered GeneMark_model.110805_t, internal, 373, 512
-recovered GeneMark_model.110805_t, internal, 646, 681
Couldn't classify 74, 172
Couldn't classify 864, 953
Sorry, prediction snap_scaffold_3102-snap.1-T1 fails validation.
(GAG)	 AG	74-172	GT	AGG
(CAG)	 AG	373-498	GT	CGG
(GTG)	 AG	864-953	GT	TAG
-recovered snap_scaffold_3102-snap.1-T1, internal, 74, 172
-recovered snap_scaffold_3102-snap.1-T1, internal, 373, 498
-recovered snap_scaffold_3102-snap.1-T1, internal, 864, 953

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1068
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support