-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 282, 446
Sorry, prediction GeneMark_model.110803_t fails validation.
(GGA)	 AG	282-446	GT	AGG
(GGC)	 AG	497-650	GT	GAG
-recovered GeneMark_model.110803_t, terminal, 497, 650
-recovered GeneMark_model.110803_t, internal, 282, 446
-recovered GeneMark_model.110803_t, internal, 497, 650

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 188
Couldn't classify 406, 496
Sorry, prediction snap_scaffold_3100-snap.1-T1 fails validation.
(ATC)	 AG	55-188	GT	TGG
(GCA)	 AG	406-496	GT	AGG
-recovered snap_scaffold_3100-snap.1-T1, internal, 55, 188
-recovered snap_scaffold_3100-snap.1-T1, internal, 406, 496
Valid prediction for GlimmerHMM_glimmerT_63286-T1
Valid prediction for CodingQuarry_transcript_46398-T1
Valid prediction for Augustus_model.g42264.t1
Valid prediction for GeneMark_model.110804_t
Couldn't classify 55, 188
Couldn't classify 406, 709
Sorry, prediction pasa_asmbl_40877.p1 fails validation.
(ATC)	 AG	55-188	GT	TGG
(GCA)	 AG	406-709	CC	TAC
-recovered pasa_asmbl_40877.p1, internal, 55, 188

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1068
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support