-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_31

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60954-T1
Valid prediction for Augustus_model.g40546.t1
Valid prediction for snap_scaffold_31-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_60956-T1
Valid prediction for snap_scaffold_31-snap.8-T1
Valid prediction for Augustus_model.g40547.t1
Valid prediction for snap_scaffold_31-snap.14-T1
Valid prediction for GlimmerHMM_glimmerT_60955-T1
Valid prediction for GeneMark_model.106148_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_31-snap.13-T1
Valid prediction for snap_scaffold_31-snap.9-T1
Valid prediction for snap_scaffold_31-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60953-T1
Valid prediction for Augustus_model.g40545.t1
Valid prediction for GlimmerHMM_glimmerT_60948-T1
Valid prediction for GlimmerHMM_glimmerT_60944-T1
Valid prediction for GlimmerHMM_glimmerT_60946-T1
Valid prediction for snap_scaffold_31-snap.12-T1
Valid prediction for GlimmerHMM_glimmerT_60952-T1
Valid prediction for GlimmerHMM_glimmerT_60942-T1
Valid prediction for GeneMark_model.106144_t
Valid prediction for GlimmerHMM_glimmerT_60941-T1
Valid prediction for GlimmerHMM_glimmerT_60945-T1
Valid prediction for snap_scaffold_31-snap.1-T1
Valid prediction for GeneMark_model.106146_t
Valid prediction for snap_scaffold_31-snap.6-T1
Valid prediction for snap_scaffold_31-snap.16-T1
Valid prediction for GeneMark_model.106142_t
Valid prediction for snap_scaffold_31-snap.15-T1
Valid prediction for GlimmerHMM_glimmerT_60943-T1
Valid prediction for snap_scaffold_31-snap.10-T1
Valid prediction for GlimmerHMM_glimmerT_60947-T1
Valid prediction for snap_scaffold_31-snap.7-T1
Valid prediction for GlimmerHMM_glimmerT_60950-T1
Valid prediction for GlimmerHMM_glimmerT_60951-T1
Valid prediction for snap_scaffold_31-snap.3-T1
Valid prediction for GeneMark_model.106141_t
Valid prediction for GlimmerHMM_glimmerT_60949-T1
Valid prediction for snap_scaffold_31-snap.2-T1
Valid prediction for snap_scaffold_31-snap.11-T1
Valid prediction for GeneMark_model.106145_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47337, rend_intergenic: 45156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 50970
-exon list size: 108


building trellis

0.9    
1.8    
2.7    
3.6    
4.5    
5.5    
6.4    
7.3    
8.2    
9.1    
10.0    
10.9    
11.8    
12.7    
13.6    
14.5    
15.5    
16.4    
17.3    
18.2    
19.1    
20.0    
20.9    
21.8    
22.7    
23.6    
24.5    
25.5    
26.4    
27.3    
28.2    
29.1    
30.0    
30.9    
31.8    
32.7    
33.6    
34.5    
35.5    
36.4    
37.3    
38.2    
39.1    
40.0    
40.9    
41.8    
42.7    
43.6    
44.5    
45.5    
46.4    
47.3    
48.2    
49.1    
50.0    
50.9    
51.8    
52.7    
53.6    
54.5    
55.5    
56.4    
57.3    
58.2    
59.1    
60.0    
60.9    
61.8    
62.7    
63.6    
64.5    
65.5    
66.4    
67.3    
68.2    
69.1    
70.0    
70.9    
71.8    
72.7    
73.6    
74.5    
75.5    
76.4    
77.3    
78.2    
79.1    
80.0    
80.9    
81.8    
82.7    
83.6    
84.5    
85.5    
86.4    
87.3    
88.2    
89.1    
90.0    
90.9    
91.8    
92.7    
93.6    
94.5    
95.5    
96.4    
97.3    
98.2    
99.1    
-found 10 predictions from path traversal
Error with prediction: snap lend_intergenic: 47337, rend_intergenic: 45156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support