-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3096

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 61, 93
Couldn't classify 800, 909
Sorry, prediction GeneMark_model.110802_t fails validation.
(GAG)	 AG	61-93	GT	GAG
(AGA)	 AG	413-501	GT	AAG
(GCT)	 AG	800-909	GT	TGG
-recovered GeneMark_model.110802_t, internal, 61, 93
-recovered GeneMark_model.110802_t, internal, 413, 501
-recovered GeneMark_model.110802_t, internal, 800, 909
Couldn't classify 800, 930
Sorry, prediction Augustus_model.g42263.t1 fails validation.
(GCT)	 AG	800-930	GT	ATG
-recovered Augustus_model.g42263.t1, internal, 800, 930
Valid prediction for GlimmerHMM_glimmerT_63285-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63285-T1 800-990-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1068
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support